QuickRecipe

Description

Quick clust single cell gene expression matrix with Seurat pipeline

Usage

## S4 method for signature 'Seurat'
QuickRecipe(
  counts = NULL,
  min.cells = 20,
  min.features = 200,
  nvar = 3000,
  resolution = 0.5,
  assay = NULL,
  ndim = 20,
  verbose = TRUE
)

Arguments

counts raw counts matrix or Seurat object.
min.cells Only compute for features in at least this many cells
min.features Only computer for cells contained at least this many features
nvar Number of high variable features selected for PCA analysis
resolution Value of the resolution parameter pass to FindClusters, use a value above (below) 1.0 if you want to obtain a larger (smaller) number of communities
assay Assay name. Default is ‘RNA’.
ndim Use top N PCs for clustering and UMAP. Default is 20.

Value

Seurat object

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